.PHONY: run
run: rm-cache
	./main.py -m models/v3.json -i genomes/genome1.fa -o predictions/annotation1.fa

.PHONY: cache
cache:
	./main.py -m models/v3.json -i genomes/genome1.fa -o predictions/annotation1.fa

.PHONY: cross
cross:
	./hmm.jl -m models/v1.json -c

.PHONY: compare
compare:
	./compare_anns.py predictions/annotation1.fa annotations/annotation1.fa

.PHONY: rm-cache
rm-cache:
	rm -f cache/*
